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Introduction to the microbiome R package1 months ago
Introduction | Installation | Further reading | Acknowledgements | Session info
microbiome 1.35.1Leo Lahti, Sudarshan Shetty, et al.vignette.Rmd
Using microbiome with TreeSummarizedExperiment1 months ago
Introduction | A note on masking | Getting a TreeSummarizedExperiment | Accessors | Choosing the assay | Transformations | Alpha diversity and related indices | Core microbiota and prevalence | Subsetting | Visualization | Time series | What is not supported | Session info | References
microbiome 1.35.1Leo Lahti, Sudarshan Shetty, et al.treesummarizedexperiment.Rmd
Sotkanet API R tools2 years ago
Introduction | Installation | Usage | Listing availabe indicators | Querying Sotkanet data | Examples | Licensing and Citations | Sotkanet data | Sotkanet R package | Suggestions and bug reports | Session info
sotkanet 0.10.1Leo Lahti tutorial.Rmd
microbiomeDataSets2 years ago
Microbiome example data sets
microbiomeDataSets 1.21.0Leo Lahti microbiomeDataSets.Rmd
sorvi Tutorial3 years ago
Finnish open (government) data toolkit for R | Introduction | Installation | Using the package | Historical mapping and data sets | Licensing and Citations | Session info
sorvi 0.8.21rOpenGov core teamsorvi_tutorial.Rmd
Introduction to the netresponse R package4 years ago
netresponse - probabilistic tools for functional network analysis | Background | Usage examples | PCA visualization | Network visualization | Heatmap visualization | Boxplot visualization | Color scale | Cluster assignments | Nonparametric Gaussian mixture models | Citing NetResponse | Version information
netresponse 1.73.0Leo Lahti et al.NetResponse.Rmd
Robust Probabilistic Averaging (RPA)4 years ago
How to use | Citing RPA
RPA 1.69.0Leo LahtiRPA.Rmd
Vignette for the eurostat R package5 years ago
Installation
eurostat 4.1.1Leo Lahti vignette.Rmd