microbiome - Microbiome Analytics
Provides methods for microbiome data analysis and visualization, including compositional transformations, community profiling, diversity analysis, and exploration of taxonomic abundance data represented as phyloseq objects.
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metagenomicsmicrobiomesequencingsystemsbiologyhitchiphitchip-atlashuman-microbiomemicrobiologymicrobiome-analysisphyloseqpopulation-study
13.02 score 319 stars 5 dependents 3.3k scripts 3.9k downloads
eurostat - Tools for Eurostat Open Data
Tools to download data from the Eurostat database <https://ec.europa.eu/eurostat> together with search and manipulation utilities.
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ropengoveurostateurostat-data
11.91 score 255 stars 5 dependents 1.3k scripts 4.5k downloads
sorvi - Functions for Finnish Open Data
Misc support functions for rOpenGov and open data downloads.
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6.82 score 13 stars 168 scripts 282 downloads
sotkanet - Sotkanet Open Data Access and Analysis
Access statistical information on welfare and health in Finland from the Sotkanet open data portal <https://sotkanet.fi/sotkanet/fi/index>.
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ropengovfinlandhealthsotkanet-data-portal
5.92 score 10 stars 28 scripts 347 downloadsnetresponse - Functional Network Analysis
Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.
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cellbiologyclusteringgeneexpressiongeneticsnetworkgraphandnetworkdifferentialexpressionmicroarraynetworkinferencetranscription
5.89 score 3 stars 37 scripts 626 downloadsRPA - RPA: Robust Probabilistic Averaging for probe-level analysis
Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays.
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geneexpressionmicroarraypreprocessingqualitycontrol
5.86 score 1 dependents 24 scripts 626 downloadsmicrobiomeDataSets - Experiment Hub based microbiome datasets
microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.
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experimenthubexperimentdatamicrobiomedatasequencingdatadatapkg
4.73 score 54 scripts